PhD Thesis - Structural Bioinformatics

Fornés O. On the characterization of protein DNA interactions using statistical potentials and protein - protein interactions. Universitat Pompeu Fabra. January, 21st 2015. Thesis Director: Oliva B.

2015

PhD Thesis - Structural Bioinformatics

García J. Protein-protein interaction network: management of databases and its applications on the computational study of protein-protein interactions. Universitat Pompeu Fabra. January 23th 2015. Thesis Director: Oliva B.

2015

PhD Thesis - Structural Bioinformatics

Bonet J. Exploiting protein fragments in protein modelling and function prediction. Universitat Pompeu Fabra. January 30th 2015. Thesis Director: Oliva B.

2015

Original articles in indexed journals - Structural Bioinformatics

Bonet J, Segura J, Planas-Iglesias J, Oliva B, Fernandez-Fuentes N. Frag'r'Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design. Bioinformatics, 2014;30 (13): 1935-1936. PMID: 24603983 . DOI: 10.1093/bioinformatics/btu129 JUL 1 2014.

2014

Original articles in indexed journals - Structural Bioinformatics

Guney E, García-García J, Oliva B. GUILDify: a web server for phenotypic characterization og genes through biological data integration and network-based priorization algorithms. Bioinformatics, 2014; 30 (12):1789-1790. PMID: 24532728 . DOI: 10.1093/bioinformatics/btu092 JUN 15 2014.

2014

Original articles in indexed journals - Structural Bioinformatics

Vives-Adrian L, Lujan C, Oliva B, van der Linden L, Selisko B, Coutard B, Canard B, van Kuppeveld FJ, Ferrer-Orta C, Verdaguer N.The crystal structure of a Cardiovirus RNA-dependent RNA polymerase reveals an unusual conformation of the polymerase active site. J Virol, 2014. PMID: 24600002 . DOI: 10.1128/JVI.03502-13.

2014

Original articles in indexed journals - Structural Bioinformatics

Guney E, Oliva B. Analysis of the robustness of network-based disease-gene prioritization methods reveals redundancy in the human interactome and functional diversity of disease-genes. PLoS One, 2014; 9(4): e94686 . PMID: 24733074 . DOI: 10.1371/journal.pone.0094686. eCollection 2014..

2014

Original articles in indexed journals - Structural Bioinformatics

Fornes O, Garcia-Garcia J, Bonet J, Oliva B. On the Use of Knowledge-Based Potentials for the Evaluation of Models of Protein-Protein, Protein-DNA, and Protein-RNA Interactions. Adv Protein Chem Str, 2014; 94: 77-120 . PMID: 24629186 . DOI: 10.1016/B978-0-12-800168-4.00004-4..

2014

Original articles in indexed journals - Structural Bioinformatics

Bonet J, Planas-Iglesias J, García-García J, Marín-López MA, Fernández-Fuentes N*, Oliva B*. ArchDB 2014: structural classification of loops in proteins. Nucleic Acids Res, 2014;
42 (D1): D315-D319. PMID: 24265221 . DOI: 10.1093/nar/gkt1189 JAN 2014.

2014

Original articles in indexed journals - Structural Bioinformatics

Engin HB, Guney E, Keskin O, Oliva B, Gursoy A. Integrating Structure to Protein-Protein Interaction Networks That Drive Metastasis to Brain and Lung in Breast Cancer. PLoS One, 8(11):e81035. PMID: 24278371 . DOI: 10.1371/journal.pone.0081035 NOV 22 2013.

2013